rs36529137 SNP Detail

Summary

• ID
  rs36529137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60195793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCAAACT GCTATTTCTG
  TTACTGCCTG CATGCCCTGG GCAGGGAAAT GAGGTTCAGG GAGAGCCTGG CTGGTCTGGA
  ACTCACTGCG GAGACCAGGC TAGCCTCAGA TTTGGAGCAG TCCTCCTGCC TCTGCCTCCC
  AACTTCTGGG ACCCCAGGTG TGAACTTTTG GAAAAGAAGC CACACGCTTT CAGTCTTGAG
  R
  ACAGAGACAC AAGATGGTAG AGCATTTCGG GCTGAGGAGG CTGGGGACTT TTCTGCTCCT
  GAGACTCTAA GGGTGAGGTG GAAGCCTTGA ACTTGACCTC CGAGGTGGGT TAGTCTTTCT
  TCTCCATACA CCTCCATCCT TGGGTTTTGA TGTTTAAATC CTCCCCAGTT CTTGGGGCTG
  GGAAATCTCT TTCTGGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ
ss50866528	NES14170977	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ
rs36529137					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866528	NES14170977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60195793 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	809 bp proximal
Tssr93621	transcription start site region 93621	1977 bp downstream
Tssr93622	transcription start site region 93622	1893 bp downstream
Tssr93623	transcription start site region 93623	1529 bp downstream
Tssr97721	transcription start site region 97721	1914 bp upstream
Tssr97722	transcription start site region 97722	1780 bp upstream
Tssr97723	transcription start site region 97723	1748 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates