rs36529318 SNP Detail

Summary

• ID
  rs36529318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGACAC TAGGGGAATT
  CAAGAGGGAT AAAGGATGCT AGAGGGCGAG TAGGGGACAG TTACAGAGAA GATTTTCCTA
  GAATAAAATT TTCAAATCTA AAATTCATGG GAAGGACTGG AATATCCAAA AAGGGGAAAA
  CGGATGTGGG CTCCTTCCTG ACCCAGGGAA CCACAGAGGT TTGTCACGAA AGATAGTCTG
  Y
  CAAGTTGCAA GATCAAATTC AGTGATTATT CTTTGGTTGT AACACTCCCA TGACTCCCAA
  TGCCCTCTGA AAAATATCAA AGACGACTAG CCAGGCGCCC ATCCATTCAG TCAATAAACC
  TGTCATAACT CCACAAGAGC CTGTATCTGT GCTGGCCATG TGGAGGACAA AGCAGGAGCC
  AACGGTGACT TGTCTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887441	NES14907469	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36529318					SNP	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887441	NES14907469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837492 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	147 bp distal
Rr644171	regulatory region 644171	234 bp distal
Tssr65386	transcription start site region 65386	956 bp downstream
Tssr65387	transcription start site region 65387	623 bp downstream
Tssr65388	transcription start site region 65388	525 bp downstream
Tssr65389	transcription start site region 65389	471 bp downstream
Tssr65390	transcription start site region 65390	1655 bp upstream
Tssr65391	transcription start site region 65391	1686 bp upstream
Tssr65392	transcription start site region 65392	1708 bp upstream
Tssr65393	transcription start site region 65393	1846 bp upstream
Tssr65394	transcription start site region 65394	1895 bp upstream
Tssr71448	transcription start site region 71448	960 bp upstream
Tssr71449	transcription start site region 71449	947 bp upstream
Tssr71450	transcription start site region 71450	935 bp upstream
Tssr71451	transcription start site region 71451	528 bp upstream
Tssr71452	transcription start site region 71452	1699 bp downstream
Tssr71453	transcription start site region 71453	1722 bp downstream
Tssr71454	transcription start site region 71454	1749 bp downstream