rs36530394 SNP Detail

Summary

• ID
  rs36530394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24685781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGGCGC CTGCTGCCTC
  GCGCCTTAAT TTGCTGGCGG TGGCCATCCC TGCGGGCAGC AGCCAGTCAG CGTGGTCTCA
  CGTCACTGCT TCCAGACTGT GCGGAGTGGG GCGGGGCCGA GCGGCGCAGG GAGAGAGCGC
  CTAGGGCACT GCGCCCTCCT GCCTCTGCGC TCCCGGTGGA GAGCCGGAGA AGACGCACAG
  Y
  GAACAGGGTG GCGGAGCTAG CCGGACCGCC TCCGCCCAGA GTCTCAGATC CCGCAGGAGG
  GAAGCATGCG CTGTCTAGAG AGGCACTTTC ACTGCTACCC AGAAACAGGC ATTTGCGTTG
  CTCTGGACTG AATGTCACCA AAGGAAGTCC TACTGAGTTC CGCATTTTCT ACCTTTCCTA
  CTGGAGCTCC CAAATAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50654659	NES14025685	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36530394					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654659	NES14025685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24685781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	within coordinates
Gm29824	predicted gene, 29824	1239 bp upstream
Rr675417	regulatory region 675417	within coordinates
Rr675418	regulatory region 675418	796 bp proximal
Rr675419	regulatory region 675419	1297 bp proximal
Rr675420	regulatory region 675420	1747 bp proximal
Tbx20	T-box 20	201 bp upstream
Tssr88515	transcription start site region 88515	1303 bp upstream
Tssr88516	transcription start site region 88516	194 bp upstream