rs36532913 SNP Detail

Summary

• ID
  rs36532913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAACACG CATGAAGGCC
  TGTGTTTGAC CCCAGCGACA CACCAACGTG ATAGTGCACG CCTGCAATCC CAGCATTTGG
  GAGCTGATGA CAGGGGGATT AAAAGTTCAA GGTAATCCCC AGTTACAGAT GGAATTGAAG
  CTAGCTTGGG TTAAATGCAA CTTTGTTTCA AAAACAAACA ACCCTCCTTT GTCATTTTAA
  W
  ACAACAGTGG CAACAATCAT AATGTTATTG TCACGGTCAT TGTTGACTCA CTAATGTCCT
  TATGAAAACC AGACACTGGC TTTACTCCTT TGATTCTCAT GGGGGATGAG AGCTATTATA
  TTACAGATGC TGAGAGGGAG GTAAAGGGAG GGCTTCCAGG AGCACACGGG TAGGAAAAGG
  CAAGACTGAA GGCACACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118308	NES13854515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36532913					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118308	NES13854515	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520484 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1939 bp distal
Rr611420	regulatory region 611420	244 bp proximal
Rr611421	regulatory region 611421	660 bp proximal
Sod3	superoxide dismutase 3, extracellular	662 bp upstream
Tssr46168	transcription start site region 46168	770 bp upstream
Tssr46169	transcription start site region 46169	783 bp upstream
Tssr46170	transcription start site region 46170	814 bp upstream