rs3653458 SNP Detail

Summary

• ID
  rs3653458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGTTTC TCCACACATA
  AGCAGATCAG ATCTCAAATT CAAATAAATC AAGACCCCAA AGCCACTGCA GGACCCAAAA
  CCCCTATATG ATGAGGGATT TTAAAGATAG CAACAAGCAT TTAGTTTTGT TCCTCAGAGG
  CGAGAATCTT CCAAAGTTGC TCCTGGTATC CCAGGGGACC CAAATGTAGG ACTAGGGAGA
  Y
  GGAGGATGAA CTGGGGTTAC TAGCAAGCTG GTGTTACCAT TTGAGGACTA ACCTGTTCAT
  TGTGCCCAAC AATGCCTATG CTGATTGTCC TAGCTAGCCC TAATTGTCAA CTTGACATAG
  CTTAAAGTCA TCTGAGAGAA CCCTCAATTG CAGAGCTGTC TAAACCAGGT TGGCCTGTGG
  CCCTGTCTGT GAGGGATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5029344	WI_WGS_7_20392206	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3653458					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835413 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1743 bp proximal
Rr644171	regulatory region 644171	1824 bp proximal
Tssr65385	transcription start site region 65385	930 bp downstream
Tssr65386	transcription start site region 65386	1116 bp upstream
Tssr65387	transcription start site region 65387	1445 bp upstream
Tssr65388	transcription start site region 65388	1542 bp upstream
Tssr65389	transcription start site region 65389	1598 bp upstream
Tssr71448	transcription start site region 71448	1110 bp downstream
Tssr71449	transcription start site region 71449	1120 bp downstream
Tssr71450	transcription start site region 71450	1137 bp downstream
Tssr71451	transcription start site region 71451	1530 bp downstream