rs3653510 SNP Detail

Summary

• ID
  rs3653510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCTCAA ATTCAAATAA
  ATCAAGACCC CAAAGCCACT GCAGGACCCA AAACCCCTAT ATGATGAGGG ATTTTAAAGA
  TAGCAACAAG CATTTAGTTT TGTTCCTCAG AGGCGAGAAT CTTCCAAAGT TGCTCCTGGT
  ATCCCAGGGG ACCCAAATGT AGGACTAGGG AGATGGAGGA TGAACTGGGG TTACTAGCAA
  R
  CTGGTGTTAC CATTTGAGGA CTAACCTGTT CATTGTGCCC AACAATGCCT ATGCTGATTG
  TCCTAGCTAG CCCTAATTGT CAACTTGACA TAGCTTAAAG TCATCTGAGA GAACCCTCAA
  TTGCAGAGCT GTCTAAACCA GGTTGGCCTG TGGCCCTGTC TGTGAGGGAT TGTGCTGGCT
  TTTGAATGAT GTAGGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5029396	WI_WGS_7_20392233	WI	MOUSE	f	SNP	A			G
ss148632105	ENSMUSSNP4502155	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3653510					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835440 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1716 bp proximal
Rr644171	regulatory region 644171	1797 bp proximal
Tssr65385	transcription start site region 65385	957 bp downstream
Tssr65386	transcription start site region 65386	1089 bp upstream
Tssr65387	transcription start site region 65387	1418 bp upstream
Tssr65388	transcription start site region 65388	1515 bp upstream
Tssr65389	transcription start site region 65389	1571 bp upstream
Tssr71448	transcription start site region 71448	1083 bp downstream
Tssr71449	transcription start site region 71449	1093 bp downstream
Tssr71450	transcription start site region 71450	1110 bp downstream
Tssr71451	transcription start site region 71451	1503 bp downstream