rs36535182 SNP Detail

Summary

• ID
  rs36535182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25190561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTGGGGT ACATGAAGAG GCTGTCTGGA ACATACAACC
  CGCCTTGGGT AAACTGTGCT TTACTATTGA ATGCTTTAGT TCAGAACAAA GGACAGCTGA
  R
  GCCTCTACAT GGGGAAGAGC CAGGCCACAG CAGTTCTGAG GACACTCTAG TGTGTCCCCT
  CCATCCTGTT CTTTCTACTC TTGAGTGGGT GCGCGCATAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51082720	NES13879783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs36535182					SNP	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082720	NES13879783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25190561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			279 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608457	regulatory region 608457			1554 bp distal
Rr608458	regulatory region 608458			1946 bp distal
Rr608459	regulatory region 608459			1809 bp distal
Rr608460	regulatory region 608460			within coordinates
Rr608461	regulatory region 608461			307 bp proximal
Tssr45452	transcription start site region 45452			277 bp upstream