rs3653530 SNP Detail

Summary

• ID
  rs3653530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAAAT AAATCAAGAC
  CCCAAAGCCA CTGCAGGACC CAAAACCCCT ATATGATGAG GGATTTTAAA GATAGCAACA
  AGCATTTAGT TTTGTTCCTC AGAGGCGAGA ATCTTCCAAA GTTGCTCCTG GTATCCCAGG
  GGACCCAAAT GTAGGACTAG GGAGATGGAG GATGAACTGG GGTTACTAGC AAGCTGGTGT
  W
  ACCATTTGAG GACTAACCTG TTCATTGTGC CCAACAATGC CTATGCTGAT TGTCCTAGCT
  AGCCCTAATT GTCAACTTGA CATAGCTTAA AGTCATCTGA GAGAACCCTC AATTGCAGAG
  CTGTCTAAAC CAGGTTGGCC TGTGGCCCTG TCTGTGAGGG ATTGTGCTGG CTTTTGAATG
  ATGTAGGAAG GACCGGTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5029416	WI_WGS_7_20392241	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3653530					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835448 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1708 bp proximal
Rr644171	regulatory region 644171	1789 bp proximal
Tssr65385	transcription start site region 65385	965 bp downstream
Tssr65386	transcription start site region 65386	1081 bp upstream
Tssr65387	transcription start site region 65387	1410 bp upstream
Tssr65388	transcription start site region 65388	1507 bp upstream
Tssr65389	transcription start site region 65389	1563 bp upstream
Tssr71448	transcription start site region 71448	1075 bp downstream
Tssr71449	transcription start site region 71449	1085 bp downstream
Tssr71450	transcription start site region 71450	1102 bp downstream
Tssr71451	transcription start site region 71451	1495 bp downstream