rs36535330 SNP Detail

Summary

• ID
  rs36535330
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58663440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTGCCT CGCCATCTCC
  AAATATGACC TCATGTGTCC TTCCTGGGTT TCTCTCTCAG CAGTGGGAGG ACACACAGGA
  TTCTAAGCCT AGTTGAACTA ATTTCTGTTT CTTCTTAATG GTGTGGGGGA TGCTCTGAAG
  GGGGTAGGGA ACACGTCTCC TTAGAAACCA AGGTCTGGAG GCACCCTTGA CCATCTGGCA
  W
  TTTGAATTAC TTGGAAACAT TTTAATGAAG CTTTCCTTCC AACAGTCTGA TCTGGGATAC
  TCACTTAACA ATGTCCACCT GATTGGCCAC AGCCTGGGTT CCCACATTGC TGGGGAGGCT
  GGAAAGAGGA CCTTTGGAGC CATTGGAAGG ATCACAGGTT GGTTTAACAT CAAATTCTAG
  ATGTTGAGAC TGTCTGTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904015	NES13492683	PERLEGEN	MM_PANEL2	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs36535330					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904015	NES13492683	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58663440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	959 bp proximal
Pnlip	pancreatic lipase	within coordinates
Tssr5571	transcription start site region 5571	1881 bp downstream
Tssr157266	transcription start site region 157266	1923 bp downstream
Tssr157267	transcription start site region 157267	1904 bp downstream
Tssr157268	transcription start site region 157268	1850 bp downstream
Tssr157269	transcription start site region 157269	1257 bp downstream
Tssr157270	transcription start site region 157270	1183 bp downstream
Tssr157271	transcription start site region 157271	48 bp upstream
Tssr157272	transcription start site region 157272	59 bp upstream
Tssr157273	transcription start site region 157273	1190 bp upstream
Tssr157274	transcription start site region 157274	1222 bp upstream
Tssr157275	transcription start site region 157275	1242 bp upstream
Tssr157276	transcription start site region 157276	1265 bp upstream
Tssr157277	transcription start site region 157277	1506 bp upstream
Tssr159959	transcription start site region 159959	1871 bp upstream
Tssr159960	transcription start site region 159960	1823 bp upstream
Tssr159961	transcription start site region 159961	140 bp downstream