rs36535444 SNP Detail

Summary

• ID
  rs36535444
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAAAA AGAAAGAATC
  ACTTCAAAGA CTGAATGAAA ATAAGGATTT AACAAGATGA TTGGAGAAGC CAGGATTTGG
  TAGGGTGTAT GTGGGTGGTT GTGGGTGGCT GTAGGTGGTA GGTGGCTGAG GGTGGCTGGC
  AGCCATGGGC AGTGGGTAGT ACCTGACACT CTATAAGCTC ATTTGTTGAG GACAGCTACT
  S
  CCAACAGCAG ATAAAAAGTT CAGGGCTGAA CTGGCTTCTA GGGGACGCCA CCTGAAGGAG
  GTTCACTGAG CTCCAGGAGG CACGCAGAGA ACAGGTTACC GAACAAACTT CCCACCTGCC
  AGGCCTGGCG ACTGGAGGTG TCAGGGGCCA TTCTGTCTCT AGCTGTACCA CTGATGCTCG
  GTTATCTTCC TAAGTGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118320	NES13854569	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	C	G	G	G		G	G	C
ss148439976	ENSMUSSNP2745350	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36535444					SNP	G	G	G	G	G	G	G	C	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118320	NES13854569	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519791 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1246 bp distal
Rr611420	regulatory region 611420	937 bp proximal
Rr611421	regulatory region 611421	1353 bp proximal
Sod3	superoxide dismutase 3, extracellular	1355 bp upstream
Tssr46168	transcription start site region 46168	1463 bp upstream
Tssr46169	transcription start site region 46169	1476 bp upstream
Tssr46170	transcription start site region 46170	1507 bp upstream