rs36536518 SNP Detail

Summary

• ID
  rs36536518
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109708633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGAAGAACCT GGACAAGCTT CCCTCCCCAT ACTGTTGACT GGATCTTGTA
  K
  CTACCGTTAG CCACCATCAT CGCCATTGTG TGCCTCTTAG GAGCATTTCC           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052583	NES14374020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36536518					SNP	G	G	G	G	G	G	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052583	NES14374020	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109708633 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	959 bp downstream
Mir369	microRNA 369	1219 bp upstream
Mir377	microRNA 377	1622 bp downstream
Mir409	microRNA 409	959 bp upstream
Mir410	microRNA 410	1516 bp upstream
Mir412	microRNA 412	1090 bp upstream
Mir541	microRNA 541	210 bp upstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	959 bp proximal
Mirg	miRNA containing gene	within coordinates
Tssr115183	transcription start site region 115183	547 bp downstream
Tssr115184	transcription start site region 115184	1588 bp upstream
Tssr117762	transcription start site region 117762	577 bp upstream