rs36538885 SNP Detail

Summary

• ID
  rs36538885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127722604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAGAAAA AAAAACTGTC TAGAACCCTC AGACTCTCCA
  AAAGTCACCC TGTGACAATC TGCCAAGCCC CATGACTGGC AGGGCTAACC TGTCCTTTGC
  Y
  CTAGGACTAA AGGTACTAAA GGCACTCTGC AAACAGTCAC ACTGGGCCCA GGCTGTTAAT
  ATTTTATTAC CCATAATGCC CTGTTCTCAT GTTTAATCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50946009	NES14148132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36538885					SNP	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50946009	NES14148132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127722604 () rs orientation: forward

Symbol	Name	Function Class
Rdh7	retinol dehydrogenase 7	within coordinates
Rr218503	regulatory region 218503	1604 bp distal
Rr226506	regulatory region 226506	within coordinates
Rr226507	regulatory region 226507	1788 bp proximal
Tssr99825	transcription start site region 99825	1501 bp upstream
Tssr99826	transcription start site region 99826	1909 bp downstream
Tssr99827	transcription start site region 99827	1953 bp downstream