rs36539824 SNP Detail

Summary

• ID
  rs36539824
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTAATAG GTTGACTTGA GTGGCAAATG CATAGATCGG
  TCTGTAGTTT AAAAAAAAAA AAAAAAAAAA AAGCAGCTCA GAGTTCTGGC CACAGACCCA
  S
  ACGACGGCCA TTGCAATAGA ATTGTTCAGC TTAATGATAT TAAAAAAAAA AAAAAAGCAC
  CCAATGAAGT CCCATACCTT CTGCAGCTTT TGATAGAAGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418788	NES13463013	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36539824					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418788	NES13463013	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	252 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	546 bp upstream
Gm58903	predicted gene, 58903	1449 bp downstream
Rr351670	regulatory region 351670	1746 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	739 bp downstream
Tssr153448	transcription start site region 153448	987 bp upstream
Tssr153449	transcription start site region 153449	894 bp upstream
Tssr153450	transcription start site region 153450	870 bp upstream