rs36540431 SNP Detail

Summary

• ID
  rs36540431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCAGCT GGGGTGGGGT
  GGAGGGGCCG GTAGTGCCCA TAGGGCTGCC TACCTCCCAG TACACCTTGC ACTTGCCCAT
  ACGCAGGGCC CACAGTGACG GTCCTCGAAG CTCCAGCTGA AGGCCGGGAG ACACATGCTG
  GAGAAGCGTC TCTGTGTAGT GCAGCTGCTT CTGATCTGGG AGCTCAGCAG GACTGGGAAA
  R
  ATCACCGGCT GGGGCTCTGA AGTTCTTACT GCTGGGGCCA TGGGGCTGTA CAGGAACACG
  CATCTGGGGT GCCCCACCAC TGCCTGTAGC ACTGTGCGGC CCTTGTACAT GATGGTCACA
  TCCAGGAACC CAAGGCTGCG CTCTGTGTAT AGACCATGCT GTGAGTGGTA GGTTTGGGTG
  GAGCATTTTG TCCCATGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51935585	NES14951799	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36540431					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935585	NES14951799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843819 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	1156 bp downstream
Rr154683	regulatory region 154683	1182 bp proximal
Rr166948	regulatory region 166948	981 bp proximal
Tssr69941	transcription start site region 69941	708 bp downstream
Tssr69942	transcription start site region 69942	1506 bp upstream
Tssr75604	transcription start site region 75604	336 bp upstream
Tssr75605	transcription start site region 75605	142 bp upstream
Tssr75606	transcription start site region 75606	64 bp upstream
Tssr75607	transcription start site region 75607	within coordinates
Tssr75608	transcription start site region 75608	48 bp downstream
Tssr75609	transcription start site region 75609	66 bp downstream
Tssr75610	transcription start site region 75610	91 bp downstream
Tssr75611	transcription start site region 75611	347 bp downstream
Tssr75612	transcription start site region 75612	609 bp downstream
Tssr75613	transcription start site region 75613	1337 bp downstream
Tssr75614	transcription start site region 75614	1547 bp downstream
Tssr75615	transcription start site region 75615	1813 bp downstream
Tssr75616	transcription start site region 75616	1951 bp downstream