rs36540833 SNP Detail

Summary

• ID
  rs36540833
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69541638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGATG GCGTTGCGAG
  CGATGCGGGG AATCGTGAAC GGGGCCGCAC CCGAACTGCC CGTGCCCACC GGTGGGCCGA
  TGGCCGGAGC TCGGGAGCAG GCGCTGGCGG TGAGCCGGAA CTACCTATCC CAGCCTCGTC
  TCAGTGAGTA CGGGAAAGTG AGCGTGTCCA CCAAGCCCTT GGCTTGTGCT CTCACCTGTT
  M
  AGCCAGCGGG GAGGGAATGG GATTCATTTC CCCCATCGCT CAGTTCACAA GCACCTCTCC
  AGCTTTGCGT GAGCTTTTCC GTGACTTCGG TGGGCCGAGC GTGAGAGCAC CGACTGGAAC
  CTTCCCATGG GCTAAGTGGG CTCCTGATGA TTGCCCTACC CGCTCCGAGT TCTCTGGGTA
  TTGTCAGACA CTGGTCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50565139	NES14071383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36540833					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565139	NES14071383	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69541638 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	within coordinates
Rr400869	regulatory region 400869	199 bp downstream
Rr664484	regulatory region 664484	330 bp distal
Rr664485	regulatory region 664485	226 bp proximal
Rr664486	regulatory region 664486	1865 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	259 bp downstream
Tssr77657	transcription start site region 77657	242 bp downstream
Tssr77658	transcription start site region 77658	190 bp downstream
Tssr81518	transcription start site region 81518	214 bp downstream