rs3654104 SNP Detail

Summary

• ID
  rs3654104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGTTTT GTTCCTCAGA
  GGCGAGAATC TTCCAAAGTT GCTCCTGGTA TCCCAGGGGA CCCAAATGTA GGACTAGGGA
  GATGGAGGAT GAACTGGGGT TACTAGCAAG CTGGTGTTAC CATTTGAGGA CTAACCTGTT
  CATTGTGCCC AACAATGCCT ATGCTGATTG TCCTAGCTAG CCCTAATTGT CAACTTGACA
  Y
  AGCTTAAAGT CATCTGAGAG AACCCTCAAT TGCAGAGCTG TCTAAACCAG GTTGGCCTGT
  GGCCCTGTCT GTGAGGGATT GTGCTGGCTT TTGAATGATG TAGGAAGGAC CGGTCCACTG
  TGGGTAGCAC CATCCCTAGG CACCAGGGCC TGGTCTATAT AAGAGAACTA AAGAGTGAGC
  CAGTGAGCCA ACCAGCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5029998	WI_WGS_7_20392324	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3654104					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835531 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1625 bp proximal
Rr644171	regulatory region 644171	1706 bp proximal
Tssr65385	transcription start site region 65385	1048 bp downstream
Tssr65386	transcription start site region 65386	998 bp upstream
Tssr65387	transcription start site region 65387	1327 bp upstream
Tssr65388	transcription start site region 65388	1424 bp upstream
Tssr65389	transcription start site region 65389	1480 bp upstream
Tssr71448	transcription start site region 71448	992 bp downstream
Tssr71449	transcription start site region 71449	1002 bp downstream
Tssr71450	transcription start site region 71450	1019 bp downstream
Tssr71451	transcription start site region 71451	1412 bp downstream