rs36541231 SNP Detail

Summary

• ID
  rs36541231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82293788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCTAGC CCTTGTTTTC
  AGGATTTTAA AATATTTTGG TGATCTGCCA TTAGATACAC AATGCTTGCT GTGCTTTTAA
  ATTTTTCCCT GTATGTGCAA CCGCATTTGA ATGTCTTCTT AGTCTTTCCC CCTCCCTTGT
  AGTCCTGACT CTCAATCCAA GAACTTTGGG AGTGTTAGGC AGACATTCTG TCTCTGAGTC
  R
  CACATCTCTA AGCCCTAACT CTTAAATGTC CAGTTCTTTA ATATCTGCCT GTCATATGAA
  GGAACAAGGA AAATCAAAGC AAATGTGTAC AGGCCTTTTA AAGTCTTCCA GTCACTTCAG
  CTGTGAGAAG AAAGGCTGAG AATTTTTGGT GAAAGGCACC ACAGCAGTGG CCTAGGGCTG
  TGCCTCTGTG ATGGGCGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51025943	NES14384812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36541231					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51025943	NES14384812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82293788 () rs orientation: forward

Symbol	Name	Function Class
Rr268532	regulatory region 268532	within coordinates
Rr403397	regulatory region 403397	1274 bp downstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114222	transcription start site region 114222	1487 bp downstream
Tssr114223	transcription start site region 114223	1313 bp downstream
Tssr114224	transcription start site region 114224	1269 bp downstream
Tssr114225	transcription start site region 114225	1199 bp downstream
Tssr114226	transcription start site region 114226	345 bp downstream
Tssr114227	transcription start site region 114227	233 bp downstream
Tssr116943	transcription start site region 116943	1606 bp upstream