rs36542658 SNP Detail

Summary

• ID
  rs36542658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143351222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAATTTAT TGAAATGAAG
  GCATTTTCTT CCCCCATGGC ATATTTCCAT AGTTGGTTCG AAAGGATATT TTTATTATTA
  TTCAAAACAG TCATTCTGAT TTGCACAGGA GATAACAGTT GTCCGTGACA TTTTTATTTC
  TGCATAAACA GATTTCCATG TTGGCGAAGG TTAGTACAGT AGGAATTTGT TTTTGCTTTC
  R
  GATGCACTGA TACCACTCAA GCACTTTGTT GGGATGGAAC CACTAATTTA TCCCTTCTGC
  CTTTATGATC TTGTCAGTAC CGCATGTCTC CCTCAGTCTT TCTAATCTAA AATAATCCCA
  CTGAAATCCT TTGATTGTCT CCTTGGACCT GCTCCATTCC TGAAGCAGGA ATGTAATGGG
  CTTTATGGCA CTTACTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss51663341	NES14647417	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs36542658					SNP	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51663341	NES14647417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143351222 () rs orientation: forward

Symbol	Name	Function Class
D3Mit17	DNA segment, Chr 3, Massachusetts Institute of Technology 17	1764 bp proximal
Gm33809	predicted gene, 33809	374 bp upstream
Gm38006	predicted gene, 38006	within coordinates
Rr398093	regulatory region 398093	1480 bp upstream