rs36543041 SNP Detail

Summary

• ID
  rs36543041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66849198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTAGA GAGGCCAATC
  GAATACACTG GAATAAGCTT ACCTCCAGAA AACTAGATCA CATTTTCTAA CAGGACAGCA
  GCAGATCTAC TAAACTAGAC TCCTGATAAG CACATAGTCC CTGTGGACTG CGTACTCAAC
  TTGCCCAAAT GCTGTACTGT GATGATAAAT CAGCATTTCA GAAGACATGT AAGGTACTAA
  Y
  TCATGATACT CTAGCTTGGC CAAACTAACA AAATTAAAAG TCTTGTGACA TTTGAACAGC
  TCTTTTTGGA GTATGACCAT TGTGAGCATT GCTTCGCCAA TTACTAAAGA TCATGCAGCT
  ATCAAGTGGT AAGAATGTTG AGACTCTGAG CTATCTTTTG ACAGTATTTG ATGCATATTT
  TGTTTAATTA GATATTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50972572	NES13935070	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36543041					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972572	NES13935070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66849198 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	1748 bp distal
Rr366707	regulatory region 366707	1779 bp downstream
Rr577871	regulatory region 577871	1821 bp distal