rs3654364 SNP Detail

Summary

• ID
  rs3654364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACACT TTGATGATTC
  GAATACTACA AAATTATCTT AGGTGTAAAA TAAAAGCCTT ATATGCGCTT CATGAAAGTT
  CAAAATAATT CATTCAGCTC CCAAAGAAAT ACAGAAAGCT GTTTTTCCCC CATTCACTTA
  CTTATTTATT TATTTTATTT AGTCACTTTA CATTCCGATT GCAGCCACCC CCCAGAAAAC
  K
  TTTTTTAAGT TATACCCAAA CTCCTTTATT TAAATAATAA CTAAGAAAAC AGATGTTGAC
  AATCTGTCAA AATAGTGGCT ATAAGTGCCA CTTAATATGC ATTTACATAG TAAGTTCTAG
  TGGTACAGAT AAAATTACAC TCCTTGGCCT GTTTATGGTG CACACCTTTA AACCCAGCAC
  TTAGGAGGCA GAGGCAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5030260	WI_WGS_14_46102817	WI	MOUSE	f	SNP	G			T
ss139575867	ENSMUSSNP2823660	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
ss324641586	CHEV_14_55635328	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3654364					SNP	G	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	397 bp distal
Gm63347	predicted gene, 63347	690 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1297 bp downstream
Rr369831	regulatory region 369831	868 bp downstream
Rr492392	regulatory region 492392	1027 bp distal
Rr492393	regulatory region 492393	1324 bp distal
Rr492394	regulatory region 492394	701 bp distal
Rr492395	regulatory region 492395	209 bp distal
Rr492396	regulatory region 492396	312 bp distal
Tssr125743	transcription start site region 125743	920 bp downstream