rs3654367 SNP Detail

Summary

• ID
  rs3654367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31242271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA ACAAAAAAAG TTAATGTGCT
  S
  ATTAGGTCAG TTAATACCAA AATGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5030263	WI_WGS_16_31207727	WI	MOUSE	f	SNP	G						C
ss48176023	NES12108631	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	C	C		G	C	G	C		C	C	C		G
ss147937353	ENSMUSSNP6254035	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
ss325134045	CHEV_16_31423539	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3654367					SNP	G	C	G	G	C	C	C	G	C	G	C	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48176023	NES12108631	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31242271 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	1163 bp distal
Rr514475	regulatory region 514475	1053 bp distal
Rr514476	regulatory region 514476	974 bp proximal
Rr514477	regulatory region 514477	1810 bp proximal
Tssr137893	transcription start site region 137893	1175 bp downstream
Tssr137894	transcription start site region 137894	1145 bp downstream
Tssr137895	transcription start site region 137895	1106 bp downstream