rs36545164 SNP Detail

Summary

• ID
  rs36545164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54536791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCCACA CTTTGGTACA
  CTGTGTGTGG TGGGCAGAAA CAGAGCCAGG AGGCATCCTC CTGTTGGCTG AACTACTGAA
  CATGTGAGTT GAGACAAATA CTACAGCCTG AATCTACTTC CTCAGAGGGA AGGTGCAGCG
  TTTGTCAGTG AGTACGGGGA TTGGAAGAAA TGTATAGATG AGGGAGACTC AGGTACTCAA
  W
  AAATGCACAT TCTCCTCCAT TTTCCTGTTT GGACAGGAAG TTTGCTTGGG TGTTCTCTTA
  TAGACCTTTT TGGCTTGTTT GTTTGTTTGT TTGTTTGTTT GTTTTCAGAG TCTTTAAAGG
  CTAACCTCAA ATTTACAATC CTCCTGCCTC TGCCTTTAAA ATACTGGGAT TATAGGTATG
  AGCCACCATA TCTGGCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018327	NES15030405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36545164					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018327	NES15030405	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54536791 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	within coordinates
Rr195671	regulatory region 195671	391 bp distal
Rr195672	regulatory region 195672	410 bp proximal
Rr195673	regulatory region 195673	1410 bp proximal