rs36547166 SNP Detail

Summary

• ID
  rs36547166
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11173989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACGAGA GGGTATAAAA
  GATGGAGAAT GGAGATGTGC CCACCTCTCT TTCCTCAACC CCCTTTCTCC AGACCGTGTC
  CATTTTGATG CTTAGCAAAA GTAAAGAGGC ACACTGTTAC CTCACATTTC AGTTGTCCCA
  AGACCCAAGG ATCCAGTTTC ACCCTATCAG GCCTAGGCAC AGGCTGAAGA GAAGGATCAC
  M
  GTGGATGGTG CTCTCAGCGC TAGATCTGGC TGCATAGCCA TCAGAGGCAG CAGCGCGCAG
  TCTAGCTCCC AGGTGGTTGT CAAGCTCCTC AAGCCGCCGG GTTGTCAAGG GCAACAGCCC
  TCTCTTAGGG CAGAGGGATG AGAACCAGTG CGCAGACTCA CTGGGGCCTG CGGGCCACGC
  CCTGGTCCCT CACTTCGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50597164	NES13640008	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	A	C	C	C	A		C	C	A	C
ss146048789	ENSMUSSNP1909051	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36547166					SNP	C	C	C	C	C	C	C	A	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597164	NES13640008	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11173989 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	192 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	59 bp downstream
Tssr158300	transcription start site region 158300	75 bp downstream