rs36547273 SNP Detail

Summary

• ID
  rs36547273
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66211316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTAACGC TCTGTGCCCA
  CACTGACTGA TGGCAGCCAT CTCCCACCAT GATGGAGGAG GGCTCCTAAG ACAGAGAGAT
  GCTCCGCTTG ATGTTCAGCT TCTACTGCTA TGCAAATCGC TTCATTTTTA AGTAGATAGG
  TGAGAAAGAC ACTCTGCTTT CTGGTTGTTG TGGTTAATAT TAGAACAGAG CGTGGAAAGT
  K
  GTCCTAAAAA GTATTATAGT TATAGTCAAG AGCATAGTGC CTGTGGTTAG ATCCATTTCT
  TAAAACTATC GTCGGTTTGA AAAAGAATGT CTCAAAGTAG AGTACCCAAG AGGAAATACC
  AAGGCTCCAG TTTCACGTAT CATCAGACTG CTGATTCCTA ACTTATTTTA GTTATCACAT
  TTTCTCCTCT AAAGACTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51731006	NES14743135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36547273					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731006	NES14743135	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66211316 () rs orientation: forward

Symbol	Name	Function Class
Rbm47	RNA binding motif protein 47	within coordinates
Rr113965	regulatory region 113965	1285 bp proximal
Rr125273	regulatory region 125273	1515 bp distal
Rr125274	regulatory region 125274	within coordinates
Rr129750	regulatory region 129750	1685 bp proximal
Tssr46522	transcription start site region 46522	837 bp downstream
Tssr46523	transcription start site region 46523	824 bp downstream
Tssr51169	transcription start site region 51169	1198 bp upstream
Tssr51170	transcription start site region 51170	526 bp downstream