rs3654787 SNP Detail

Summary

• ID
  rs3654787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAGCTG GTGTTACCAT
  TTGAGGACTA ACCTGTTCAT TGTGCCCAAC AATGCCTATG CTGATTGTCC TAGCTAGCCC
  TAATTGTCAA CTTGACATAG CTTAAAGTCA TCTGAGAGAA CCCTCAATTG CAGAGCTGTC
  TAAACCAGGT TGGCCTGTGG CCCTGTCTGT GAGGGATTGT GCTGGCTTTT GAATGATGTA
  R
  GAAGGACCGG TCCACTGTGG GTAGCACCAT CCCTAGGCAC CAGGGCCTGG TCTATATAAG
  AGAACTAAAG AGTGAGCCAG TGAGCCAACC AGCAAGCAGT TATTCCTCAT TATTTCTGCT
  TCAAGCCTGG CTTCCCTCAC AGATGAGTTG TAATTTTCTC CCCCAAAGTT GCATCTGACA
  AATGCGCTGT GTCACAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5030686	WI_WGS_7_20392427	WI	MOUSE	f	SNP	A			G
ss148632111	ENSMUSSNP609812	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3654787					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835634 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1522 bp proximal
Rr644171	regulatory region 644171	1603 bp proximal
Tssr65385	transcription start site region 65385	1151 bp downstream
Tssr65386	transcription start site region 65386	895 bp upstream
Tssr65387	transcription start site region 65387	1224 bp upstream
Tssr65388	transcription start site region 65388	1321 bp upstream
Tssr65389	transcription start site region 65389	1377 bp upstream
Tssr71448	transcription start site region 71448	889 bp downstream
Tssr71449	transcription start site region 71449	899 bp downstream
Tssr71450	transcription start site region 71450	916 bp downstream
Tssr71451	transcription start site region 71451	1309 bp downstream