rs3654811 SNP Detail

Summary

• ID
  rs3654811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:105402904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTAGCCC AGAACACCGA AGCCATTTTT CATTATAAAT
  TGTACTGTGA AATCTCTCTC ATCCCCACCC CCCCACCCCC TGCTCTGCAG ATACTGGTTT
  R
  ATCTGGCCTC TCTCTCTCTC TCTCTTCAAG GGCAGTGTTA AATGAGATCA GGAGAGGGGA
  ATGGGAGACA TTTAACCCTG CTCATCAAGA CAAGTTAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5030710	WI_WGS_9_106295469	WI	MOUSE	f	SNP			G	A
ss136919022	ENSMUSSNP1817031	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3654811					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105402904 () rs orientation: forward

Symbol	Name	Function Class
Rr198589	regulatory region 198589	897 bp proximal