rs36548798 SNP Detail

Summary

• ID
  rs36548798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75828297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCAGATTC ACCGCCTGTG ACAATACAAT GATGCTGCTG
  ACCTCACCTG TGTGTCTTGA GAAGCAAGTT AAATTCCAAG GCCTTCCATC ACTCCTAGCT
  Y
  GCTTATGCAC AGAAAGCCAG TGTCTTCTGA TCATTGTACC TCCCGCTCTG GGAATGGGAA
  AACATCACTG GAGGCAGAAC AGGGATGAGG TACCTACTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50571127	NES14070331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36548798					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50571127	NES14070331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75828297 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	1080 bp downstream
Tssr78063	transcription start site region 78063	1781 bp downstream
Tssr78064	transcription start site region 78064	1720 bp downstream
Tssr78065	transcription start site region 78065	1698 bp downstream
Tssr78066	transcription start site region 78066	1653 bp downstream
Tssr78067	transcription start site region 78067	1620 bp downstream
Tssr78068	transcription start site region 78068	1582 bp downstream
Tssr78069	transcription start site region 78069	1531 bp downstream
Tssr78070	transcription start site region 78070	1486 bp downstream
Tssr78071	transcription start site region 78071	1432 bp downstream
Tssr78072	transcription start site region 78072	1417 bp downstream
Tssr78073	transcription start site region 78073	1347 bp downstream
Tssr78074	transcription start site region 78074	1293 bp downstream
Tssr78075	transcription start site region 78075	1284 bp downstream
Tssr78076	transcription start site region 78076	1239 bp downstream
Tssr78077	transcription start site region 78077	1144 bp downstream
Tssr81820	transcription start site region 81820	1076 bp upstream