rs36549285 SNP Detail

Summary

• ID
  rs36549285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37529529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATAATG CAGCCTGTTG
  AGAGTGATTA TTGACTATGG AGCTTAGTAC AATACCTGCT TGGCACATAG CAAATGCTTA
  GTTTTATATA TCATAATATA TACATATATA CTATATATGT ATATATAATA ACTGTGTAAC
  ATATATGCTT TATTTTAATA TGTAATTTAG AGTCACAGTA AACAAAAACA ACATCTTGAA
  R
  CTCTGATTAG TTGGGAAATA TTAAACCATG AACATTTAAA AAATAAGTTT TAAAGATTTA
  TTTTTAAAAC TTTATTCCTG TGAGTACACT GTAGCTGTCT TCAGACACAC CAGAAGAGGG
  CATCAGATCT TATTACAGAT GGTTGTGAGC CACCATGTGG TTACTGGGAT TTGAACTCAG
  AACCTCTGGA AGAGCAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50794261	NES13547937	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36549285					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794261	NES13547937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37529529 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	within coordinates
Gm59222	predicted gene, 59222	within coordinates
Rr357758	regulatory region 357758	72 bp proximal
Rr357759	regulatory region 357759	1472 bp proximal
Rr364834	regulatory region 364834	523 bp distal