rs36549564 SNP Detail

Summary

• ID
  rs36549564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCAGAA CTGTTGGTAG
  AGACAACTGG GTAACCCATG ATTCCAGGTG AGGACTGAAT TGTGTCTGTG TCACACTGGG
  AACTGTCTTT CCTCTCCAGG TCTCTGATGC CACTGGACAG ATGAATCTGA CCAAGGTGGC
  TGACTCCAGC CCTTTTGCCT CTGAACTGCT AATTCCAGAT GACTGCTTTG TTCTGGACAA
  Y
  GGGCTGTGTG GCAAAATCTA CATCTGGAAG GGTATGTATG GCTCCTCTGT GTGAGCCTGA
  GGGCACCGCA GCTGCTCTGA ACCCAGCGGG CTCAGCCATC TCTGAAAACC TCAGCCCATC
  TCTATCTCAG AACTTCAAGG GCCTGTTTAG TATACGGCTG GGCCCATCCC AGACATTCAG
  ATTCATCTGG TCTGGCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51696084	NES14820956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36549564					SNP	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696084	NES14820956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535823 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	1497 bp downstream
Tssr57148	transcription start site region 57148	153 bp downstream
Tssr57149	transcription start site region 57149	within coordinates
Tssr61469	transcription start site region 61469	1025 bp upstream