rs3655038 SNP Detail

Summary

• ID
  rs3655038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48193476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT TGGCCAACCT CTTCATTACC
  R
  GACCTCAGGC TACTCTGATC ATTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss5030937	WI_WGS_9_48558972	WI	MOUSE	f	SNP						G	A
ss61394840	NES16768704	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G	G	A		G	G	G
ss136450990	ENSMUSSNP2529611	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G							G
ss322952926	CHEV_9_48090259	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3655038					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394840	NES16768704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48193476 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	within coordinates
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	174 bp proximal
Rr203997	regulatory region 203997	1881 bp proximal