rs36550499 SNP Detail

Summary

• ID
  rs36550499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAAGAA AATATAGACA
  AGTGTGGGCA CTAATGGAGA CCCCAGTAAG GAAGTAAAAT GAATGCTGTT ATTTAATCAG
  CTATGGTTGT TGCTTGTCCT GTGTTATTAC TATGGCCTGA GATAACTTAT GTTGCAATAA
  CACATTTTTG GCCTAAAGAA AATATTTCAA AGACTTGTGC TGAAGCTTAG GCATTTGTGG
  Y
  TTTCCGGAGC TGTCACCGGA TCCAGACTGT TTTCTATTCC TACTACCACT GAGACAAACC
  ACGGTAGTGG CACACTGCCT CCATCCCTCT CCCTCAGCTA GCCGGTGACC ACCCCACCCC
  CATCTCATGC AGACATTTTA GACTCTGTAC ATCAAACCCT ACAAGTACTA GTCCCTGCTT
  AGAACCATAA ATCCTTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630436	NES14594848	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	C	C	C	C	C	C	C
ss147445937	ENSMUSSNP3409190	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36550499					SNP	T	T	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630436	NES14594848	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469144 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1077 bp upstream
Tssr133931	transcription start site region 133931	1046 bp upstream
Tssr133932	transcription start site region 133932	1018 bp upstream