rs36551188 SNP Detail

Summary

• ID
  rs36551188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90173932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTACTA TCCCCCCCGC
  CCCCCCAGCG ATACCACACA CCCATAGGCT GACTTATGCT GAGCTAGCGA CAGCTTCCCC
  TTCGCAGCCA TTTCAGGAAG TAGCCTCCCT TCCCCTCTGA AGCACTCTCT CAGCCTCTAG
  CCCCTTGCAA GCTACCCGCC AGGCTTCTTC CCACCTTCAG CACCCTGGGG CACCTCAGGA
  Y
  TCTTGGGGCT TCCACTCCCC AGGGTCAGGC CATGGAGGCA GGTGAGATAA GTTACCAATA
  GGCTGTTGTG GCCCCGATTC TGTCTTGGGC TGGGTGGCGC GGGCATGGCA TGACTGGAGC
  TGACTCCTAC AGTCCCTTTG TGCCTAACTA CAGACACCTA AGGATCCTGG AGATGGGAAA
  GTCCTGGTTG CTTGGCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50992062	NES13923864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36551188					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50992062	NES13923864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90173932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	430 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	229 bp upstream
Rr397807	regulatory region 397807	1548 bp downstream
Rr580320	regulatory region 580320	1430 bp distal
Rr580321	regulatory region 580321	1506 bp distal
Rr580322	regulatory region 580322	240 bp distal
Rr580323	regulatory region 580323	1208 bp distal
Rr580324	regulatory region 580324	101 bp distal
Rr580325	regulatory region 580325	within coordinates
Tssr30184	transcription start site region 30184	1637 bp downstream
Tssr30185	transcription start site region 30185	687 bp downstream
Tssr30186	transcription start site region 30186	658 bp downstream
Tssr30187	transcription start site region 30187	124 bp downstream
Tssr30188	transcription start site region 30188	59 bp downstream
Tssr34202	transcription start site region 34202	1050 bp upstream
Tssr34203	transcription start site region 34203	228 bp upstream