rs3655150 SNP Detail

Summary

• ID
  rs3655150
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48044127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAAGA GGTTACTTTC
  AGTTAGCAGC AACCTTTGGA ACTAAGAGTT CTTAACTCAA ACATGTTTTG TTTTGTTTTG
  TTTTGTTTTT GTTATTTGTT TTGTTTTGTT CTCAGCAAGA AAGTGACACC CTAAATTTTT
  TTCCAGGAAA AAATCGCTGT CCCTTATACA GTCGCCCAGA CTTTCTACAT ACTTGGAAGA
  M
  AAATGTACCT CCCCCCCCCC GCCCCCCGCC CCAGGAGACC ATAGTTAAGA TCCCCTAGAG
  ACAACCTAAT GAATCCTGTT GACTGATTTT GAATATTTCA TTTGAGAGGT GGAAGGGGAG
  GCATCTACAA CCCTCAAATG CGAGTTGAGT TCCATGTCTG ACCCGGTGCT GGGGAGTAGA
  GGAACAGTCA GACTCACTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5031049	WI_WGS_4_46903332	WI	MOUSE	f	SNP	A			C
ss45627949	mCV24735986	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss146276397	ENSMUSSNP1995843	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3655150					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48044127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	318 bp distal
Cpgi14278	CpG island 14278	418 bp proximal
Gm57084	predicted gene, 57084	914 bp upstream
Gm69235	predicted gene, 69235	within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3	1026 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591923	regulatory region 591923	1227 bp distal
Rr591924	regulatory region 591924	699 bp distal
Rr591925	regulatory region 591925	1152 bp distal
Rr591926	regulatory region 591926	465 bp distal
Rr591927	regulatory region 591927	536 bp proximal
Rr591928	regulatory region 591928	1037 bp proximal
Rr591929	regulatory region 591929	1398 bp proximal
Tssr37180	transcription start site region 37180	1104 bp downstream
Tssr37181	transcription start site region 37181	586 bp downstream
Tssr37182	transcription start site region 37182	555 bp downstream
Tssr37183	transcription start site region 37183	475 bp downstream
Tssr37184	transcription start site region 37184	450 bp downstream
Tssr37185	transcription start site region 37185	278 bp downstream
Tssr37186	transcription start site region 37186	263 bp downstream
Tssr37187	transcription start site region 37187	988 bp upstream
Tssr37188	transcription start site region 37188	1017 bp upstream
Tssr37189	transcription start site region 37189	1048 bp upstream
Tssr37190	transcription start site region 37190	1103 bp upstream
Tssr37191	transcription start site region 37191	1130 bp upstream
Tssr37192	transcription start site region 37192	1197 bp upstream
Tssr37193	transcription start site region 37193	1253 bp upstream
Tssr37194	transcription start site region 37194	1843 bp upstream
Tssr41627	transcription start site region 41627	1628 bp upstream
Tssr41628	transcription start site region 41628	1595 bp upstream
Tssr41629	transcription start site region 41629	1256 bp upstream
Tssr41630	transcription start site region 41630	887 bp upstream
Tssr41631	transcription start site region 41631	766 bp downstream
Tssr41632	transcription start site region 41632	824 bp downstream