rs36552115 SNP Detail

Summary

• ID
  rs36552115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75423991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCAAAG CTCTCTCACT
  TCTCAGGGCT CGCTGTGGAT GTGGTTGGGC TTTTCTTAAC ATTACTGTGT ATTTTCCAAG
  TCTGGCCACA CTTCCTCAAC TGTTAGAAGG TACTTTCCAC TGTTAGCACT TCAGGCAAGG
  CAGAGCTCAG AGACCCTTAA AATGAAAGTT AATATCAATG TTGATGGCTT CTAGTATCAC
  Y
  TGCCAGGTCT GCACCATCTG AGGGGCTCCT AAGACTTCAA GCAGGGAACT GGCACACAGA
  AGCCAAAACA CGGGACGCCA AGGTGTCTTA GAGATAGGCC ATGGCGTAAA ACCTAGATTG
  GCACTCACAC AACACACAGA GTGTATACAC AATCAAGTGT GACTTTGGGG TAGTGACTAT
  AATATTTCTT ACCTATAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533035	NES14628122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36552115					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533035	NES14628122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75423991 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	within coordinates
Tssr4481	transcription start site region 4481	1653 bp downstream
Tssr4482	transcription start site region 4482	653 bp upstream
Tssr126634	transcription start site region 126634	730 bp upstream