rs36552631 SNP Detail

Summary

• ID
  rs36552631
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121069228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCTAA GAGACTAAGT
  GTTCTTGTGA AGAAGGAAAA AAAAGGAGGT ATGTGAGGTG ACAAATATGC TAACTAACTT
  GGAATCATCA TCTCACAACT TGCAGTTTGT CCTGTACATT GTAAGAAAGC TTGGGGGAAA
  TACGCTAGAT TAAAAGGGGC ATTCATAGTA CTGATATTTG ACAAAGCCAC TTAGATACGC
  W
  TTTCTCGAAC GAGTCCTAAG GCGTGCCACT TGTTCCTGAA CAGTGTGTGT GCATTACAAC
  AATCCAGTTT GACACTCCCT GAGTTCTGTA TCTTATTGGT CGGTATTTGT GATTTGTAGC
  TCAAAGCTTT GTGCATCACA GGTTATGCAC ACAGCGTCCA CGAGAGGGCG ATATAGCCTC
  GCTTTTAAGT CCTACACCGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51569581	NES14614181	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36552631					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569581	NES14614181	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121069228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	106 bp proximal
Rr287003	regulatory region 287003	within coordinates
Rr390218	regulatory region 390218	246 bp upstream
Rr404289	regulatory region 404289	within coordinates