rs3655319 SNP Detail

Summary

• ID
  rs3655319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46436938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC TGTTGATGAT ATCACACTGC
  W
  CTGGCTGCTA TGGGGAAGTC AGAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5031218	WI_WGS_17_45146746	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3655319					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46436938 () rs orientation: forward

Symbol	Name	Function Class
Mrps18a	mitochondrial ribosomal protein S18A	within coordinates
Rr341804	regulatory region 341804	1138 bp distal
Rr341805	regulatory region 341805	within coordinates
Rsph9	radial spoke head 9 homolog (Chlamydomonas)	within coordinates
Tssr5133	transcription start site region 5133	1782 bp downstream
Tssr144816	transcription start site region 144816	1734 bp downstream
Tssr144817	transcription start site region 144817	1699 bp downstream