rs36553274 SNP Detail

Summary

• ID
  rs36553274
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATTCC CTTATTTTAA
  TTTTCTATTA GGGAATTAGA AAGGGCATAA ACTGCTTTAT CCAGTGTTAT ATTAAAAGCT
  TAATGTATAT AATCTTTTAG AGGTAAAATC TACAGCCAGC AAAAGTCATG GTAAATATTC
  TTTGACTGAA CTCTCACTAA ACTCCTCTAA ATTATATGTC ATATTAACTG GTTAAATTAA
  K
  ATAAATTTGT GACATGACCT TAACTGGTTA GGTAGGATAT TTTTCTTCAT GCAAAAATAT
  GACTAATAAT AATTTAGCAC AAAAATATTT CCCAATACTT TAATTCTGTG ATAGAAAAAT
  GTTTAACTCA GCTACTATAA TCCCATAATT TTGAAAACTA TTTATTAGCT TTTGTGTTTG
  ACCCTTCCCT AGCCAAAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51676680	NES14820438	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		G	T	T		T
ss321815790	CHEV_6_70675329	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36553274					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676680	NES14820438	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702319 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1111 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1100 bp upstream
Igkj4	immunoglobulin kappa joining 4	1750 bp downstream
Igkj5	immunoglobulin kappa joining 5	1412 bp downstream
Rr158	regulatory region 158	616 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	within coordinates
Rr399685	regulatory region 399685	212 bp upstream
Rr399686	regulatory region 399686	1176 bp upstream
Tssr1880	transcription start site region 1880	1515 bp upstream
Tssr56953	transcription start site region 56953	1788 bp downstream
Tssr56954	transcription start site region 56954	1656 bp downstream
Tssr56955	transcription start site region 56955	1435 bp downstream
Tssr56956	transcription start site region 56956	473 bp upstream
Tssr56957	transcription start site region 56957	1095 bp upstream
Tssr56958	transcription start site region 56958	1142 bp upstream
Tssr56959	transcription start site region 56959	1160 bp upstream
Tssr56960	transcription start site region 56960	1183 bp upstream
Tssr56961	transcription start site region 56961	1197 bp upstream
Tssr56962	transcription start site region 56962	1205 bp upstream
Tssr56963	transcription start site region 56963	1254 bp upstream
Tssr56964	transcription start site region 56964	1269 bp upstream
Tssr56965	transcription start site region 56965	1275 bp upstream
Tssr56966	transcription start site region 56966	1286 bp upstream
Tssr56967	transcription start site region 56967	1301 bp upstream
Tssr56968	transcription start site region 56968	1325 bp upstream
Tssr56969	transcription start site region 56969	1361 bp upstream
Tssr56970	transcription start site region 56970	1374 bp upstream
Tssr56971	transcription start site region 56971	1394 bp upstream
Tssr56972	transcription start site region 56972	1420 bp upstream
Tssr56973	transcription start site region 56973	1458 bp upstream
Tssr56974	transcription start site region 56974	1490 bp upstream
Tssr56975	transcription start site region 56975	1523 bp upstream
Tssr61321	transcription start site region 61321	1147 bp downstream
Tssr61322	transcription start site region 61322	1312 bp downstream
Tssr61323	transcription start site region 61323	1327 bp downstream
Tssr61324	transcription start site region 61324	1417 bp downstream
Tssr61325	transcription start site region 61325	1483 bp downstream
Tssr61326	transcription start site region 61326	1518 bp downstream
Tssr61327	transcription start site region 61327	1532 bp downstream
Tssr61328	transcription start site region 61328	1623 bp downstream