rs36553317 SNP Detail

Summary

• ID
  rs36553317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25112564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTAGTTG TTTCACAGGA
  GAGTGATGTG GATCAAATTA CATAATGTAT ACTTGCCAGA TAGCTGTAGA GATGTGGAAA
  TAATATCCAT ACACAGGTTA TAAAGGACTT GTAGAAGCTA GTTTGACGGA AGGCAAGAGG
  CTTCTGGTGG GGGTGGTCAC TTGTTAGTAG CATATTGAAT AACTTTGAGG AAGTCAATTT
  K
  CCTGTGTGAA ACTCAGGTTT CTCTATATGC AAGTTATAGA TGTCAATGAT ATTGAAGTTA
  TGAAGGGCTC TAGTTCAAAC TATTTTTAGA TTTTAATTAA AATATAATTA CATCACCTTT
  CCTCTTTTCT TTCCCCTTGT ACCTCTTCTT CTTTCAACCT GCCTCATGTT CTTCCCTCAC
  CCTCTAAAAT TGAGGCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51566217	NES14861519	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36553317					SNP	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566217	NES14861519	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25112564 () rs orientation: forward

Symbol	Name	Function Class
Rr379084	regulatory region 379084	161 bp downstream