rs36553686 SNP Detail

Summary

• ID
  rs36553686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11505815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATTTG CTCAGCCTCA
  CACTAAGGAA CTGTTGACTC TGTCCTGGGA CTCCTCTCTG CTCCCTCATT CATTGTCAGA
  ATCTGTGCCC AAGAGGGATG AGAAGTGGTC AGAAATGGCT TTGTTGATTT AGTTTGTCAT
  CTTCACCCAC TTCTGCCAAG CAGTGAAGGG ATCAGGACAT CAATTTTAGC CCATTTGTAG
  K
  TTTGGGAAGA TCCTTTCCCT TCTCTGATGG TGGAGATGGT TTCATCTCTA CAGTCACCTC
  CCACCCAGGA GTGAGGGCTT CAGCTGACTC AGTCACACCG ACCTCTCTTC TCCTGAATTT
  AGGGAGTCTT TTCACTGATG CTGATCAGTA CTATGTTGGA ACTTGGCCTG GCTGTCCTCA
  CTGCCATGCT GTGGTGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50619014	NES13635225	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36553686					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50619014	NES13635225	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11505815 () rs orientation: forward

Symbol	Name	Function Class
Ms4a6b	membrane-spanning 4-domains, subfamily A, member 6B	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr155256	transcription start site region 155256	142 bp upstream