rs36553927 SNP Detail

Summary

• ID
  rs36553927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126768668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTGTGG CTATTACCTT
  CAGCAGGTAC CCCCTAAAAC TTCTCTGCAA GAGCAATATA TAAAGTAAAA AAGATAGCTA
  GTGGTGTTAC TCATGGAGGA AGTGCTTGCC TGGCATGCAG GAAGCTGGAA ACGAAGTGAT
  GGGGGGGGGG AGTGAGGTGA CAGCCAATAA AATTGTCACC AGGAGAACGG ATGTTGTAAA
  R
  CAGAGCCTTC CTGCCTGTTC TCCCTCCCCT GTGGGCCTGT CTGTCACTCT TGTAATTTTT
  AAATGAACAA TACGTGCTTA CACATCACCC AGAATGCTTG CTTCCTGCCT TCCCCTAACA
  GTAAGGAACC TCTAACCTGT GGCCCCGGTT CTCAGGGCTT GGAGAAGGAT GCTGGTGGAA
  AGGAGATGCC TGTGCACCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51411611	NES13709723	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36553927					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51411611	NES13709723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126768668 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	744 bp downstream
Gm67331	predicted gene, 67331	within coordinates
Rr638910	regulatory region 638910	313 bp proximal
Rr638911	regulatory region 638911	383 bp proximal