rs36554028 SNP Detail

Summary

• ID
  rs36554028
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC TCTGCCTGCA AACGTTGGCA
  S
  AGACAAGGTC AAAAGACCAT GGGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51454429	NES13991552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	C		G	G	C
ss321998855	CHEV_6_136776160	CHEVERUD	SCREENING_POP	f	SNP										C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36554028					SNP	G	G	G	C	G	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454429	NES13991552	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804637 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	within coordinates
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	within coordinates
Rr640073	regulatory region 640073	584 bp proximal
Rr640074	regulatory region 640074	1215 bp proximal
Tssr2044	transcription start site region 2044	818 bp upstream
Tssr59337	transcription start site region 59337	106 bp upstream
Tssr59338	transcription start site region 59338	122 bp upstream
Tssr59339	transcription start site region 59339	160 bp upstream
Tssr59340	transcription start site region 59340	191 bp upstream
Tssr59341	transcription start site region 59341	775 bp upstream
Tssr59342	transcription start site region 59342	1173 bp upstream
Tssr63834	transcription start site region 63834	1606 bp upstream
Tssr63835	transcription start site region 63835	1543 bp upstream
Tssr63836	transcription start site region 63836	75 bp downstream
Tssr63837	transcription start site region 63837	108 bp downstream
Tssr63838	transcription start site region 63838	127 bp downstream
Tssr63839	transcription start site region 63839	181 bp downstream
Tssr63840	transcription start site region 63840	412 bp downstream
Tssr63841	transcription start site region 63841	485 bp downstream
Tssr63842	transcription start site region 63842	547 bp downstream
Wbp11	WW domain binding protein 11	within coordinates