rs36554628 SNP Detail

Summary

• ID
  rs36554628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTCTC ACCACAGGAC
  CTTAGTCACA GGTTCCTGGT AAAAGTGAAA TCGGACCCTC TGGTTTAAGC GAAGCTAAAT
  GTTTTCAGTC AGTGAACATT GCGTTTCTCC CTTCTAGATT AAGCACCTGG GAAATGTGTT
  GGGCAATTCT TTGCACAGCA CCCTTCCCAT TCTTCTCACA AGCTGAGAGG TTTATCTGAC
  K
  GTATGGTGGA TATAAACTGA AGGACAGCAT TCAATGTCTG AAGACTGAGG CAAGTTTCCA
  CTGGCTGTGG TAATGGCGAG GGTAAGTCAA CGAACATTCT CGTTGCTCCT ACCTACATTT
  ATTATTATTA TTTTTTTTTA ATGAGAGATT TTAAACATCA CAAAATGCTC AAGGATGTCA
  TGGTGAACGG CCATTACAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685043	NES13607321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36554628					SNP	T	T	T	T	T	T	G	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685043	NES13607321	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708933 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1172 bp upstream
Gm50202	predicted gene, 50202	304 bp downstream
Gm59201	predicted gene, 59201	204 bp upstream
Rr544949	regulatory region 544949	215 bp distal
Rr544950	regulatory region 544950	114 bp distal
Rr544951	regulatory region 544951	1153 bp proximal
Tssr155454	transcription start site region 155454	952 bp downstream
Tssr155455	transcription start site region 155455	920 bp downstream
Tssr155456	transcription start site region 155456	880 bp downstream
Tssr155457	transcription start site region 155457	129 bp downstream
Tssr155458	transcription start site region 155458	1171 bp upstream