rs36555361 SNP Detail

Summary

• ID
  rs36555361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10413656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCTGAG GCTGCAGTTC
  TCATGACACC CCCTGGTGGC ACCAATGTGT TACAGCTACT TGTTCTTTCC AGAGGCCCAA
  GGACAGGCTT GGCAAGTTGG CAGACAAGAA CCAGTTAAGG ATCTGGTGGG CCGGGAGTTC
  CTGGAAGGAA GGCTTAGAGA GGGTTATGGT GGGGACCCAG CACCTTCTCT TTCCACTGGG
  Y
  TCCCATACTG AGAAGGCAGG GTCTCACAGT TTCCGGGGCT GCCAGTCTGT CCTATCTCAA
  GTAGCAATGT GCACACAGAG TCACAAGGCT TCCGGGTAAG GACTCATGTT TCCAGGCATC
  AGGCCTGAGG TGGAGCGTGC GTCTGCATGC CCCTTGGCCC GTTTGCAACT ACAACTCTGT
  GTAGGCTGGT TGTCTTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50602490	NES13639514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36555361					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50602490	NES13639514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10413656 () rs orientation: forward

Symbol	Name	Function Class
Rr544111	regulatory region 544111	1845 bp distal
Rr544112	regulatory region 544112	within coordinates
Rr544113	regulatory region 544113	157 bp distal
Rr544114	regulatory region 544114	1312 bp proximal
Rr544115	regulatory region 544115	1363 bp proximal
Syt7	synaptotagmin VII	within coordinates
Tssr155051	transcription start site region 155051	1086 bp downstream