rs36555420 SNP Detail

Summary

• ID
  rs36555420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113503844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAACTT TAGTTTTTAA
  AAAATACATA TATACATTTA TTTAGGATAG GGTGTTGCAC ACATCATGGG GTACATCTGG
  AGGTCAGAGG ACAGCCTGCA GAAGTTGGTT TTCTCATTCT ACCACATAGG TTGTAGGTAT
  TGAACTCAGT GTTGGGTAGG TACCAGCTGT ACTTCTCACG CCCACAGCTT AGCTTTTAGT
  R
  TATTTCACCC AATCCTCAAG AATCTGTTTT GTTTTTTTTT CTCTCTAACA AATCAATATA
  TTCTGAGTTT GAGAAATGTG AGTATATATA TATATATATA TATACACACA CATACACACA
  TACATACACA CACACACACA CATATATATA CTCACACACA CATACACATA TAGTCTCCAG
  CTGTAGGATA ATTCTATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51840945	NES14767012	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36555420					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840945	NES14767012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113503844 () rs orientation: forward

Symbol	Name	Function Class
Emc3	ER membrane protein complex subunit 3	within coordinates
Gm55775	predicted gene, 55775	1667 bp downstream