rs36555734 SNP Detail

Summary

• ID
  rs36555734
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143339516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAATCCA AACTGGCTTG
  AGATGTGGAT GAGAGAAACC CCAGCAGCTT AGCAGTCTTT TCTTATCTCG ATCGGGGCCT
  GGCCCCCCTG CATTTGGCTT CAGAAATAAG CATAAAGATC AGTGGTTGTG TCACAAATTC
  CTATGTATGC TTGATGGCCT AAACACATCG CTCTTACCCT GTAGGACATA CTTTAAAAAA
  M
  CCGTATTTGT GTGTTTGTGT AAACGTGGCT GCCCTCATGA AACAATAGTG CCTTTTTACT
  TGTGTCTGCA TTCAGAAAAT GGGTGTTGCA TAAATGACTC TCAAATGTAC AACACTGCAA
  ATCGTCTGTT GTTTTTACCA TGTTTTTTTA ATATTGCGCA CGCTGTCAGC TAATGGAACA
  ACGGCCTCAG GGATGTGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51458241	NES13996269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36555734					SNP	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458241	NES13996269	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143339516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18149	CpG island 18149	602 bp proximal
Gm67127	predicted gene, 67127	within coordinates
Rr640842	regulatory region 640842	175 bp proximal