rs36556924 SNP Detail

Summary

• ID
  rs36556924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87753492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGATA AAAGATATGC
  TGTCTTTTGC ATTTCTAAAT ACTGTTAAAT ACTTTGGTGT AGGTCATAGG ATCTGGTTTC
  CTGGGTAGAT GCCAAAAGAT GCAGAAGACC CTGCCTGTCC AGTATACCCT GCCTCTGGTA
  CCTACCTCTT ACAAGCTCCA CAGCCTCCCA AGATAGCAAC TACTTGCTTG GAAGCACACA
  R
  TGGACAAAGC TGTGAGATAG CTCAGAGTCA ACCCCAACAG CCAATCCTGC CATTCCTAGC
  AGCGACCTGT TTAGTTAGAG AATCCCCTAA GGTTGCTTAG TGTTGCCCTA ATCTAAATCC
  ACCATCTGCT CAAAGATGAA CATCAGGCCC CTCCTCTCTA ACCCAGGTCT CGTGGGTCCC
  ACATAGCTAA CCGAGTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51575831	NES14668900	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36556924					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575831	NES14668900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87753492 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	688 bp upstream
Rr579559	regulatory region 579559	80 bp proximal
Sh2d2a	SH2 domain containing 2A	570 bp upstream
Tssr29832	transcription start site region 29832	886 bp downstream
Tssr29833	transcription start site region 29833	540 bp upstream
Tssr29834	transcription start site region 29834	593 bp upstream
Tssr29835	transcription start site region 29835	655 bp upstream
Tssr29836	transcription start site region 29836	696 bp upstream
Tssr29837	transcription start site region 29837	803 bp upstream
Tssr29838	transcription start site region 29838	819 bp upstream
Tssr29839	transcription start site region 29839	951 bp upstream
Tssr33958	transcription start site region 33958	404 bp downstream
Tssr33959	transcription start site region 33959	602 bp downstream
Tssr33960	transcription start site region 33960	699 bp downstream