rs36559059 SNP Detail

Summary

• ID
  rs36559059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCACAC TGAGGGACGG
  GCTTTCCATG GCGGTGAGGG AGCTGCTGGG GGTGCAGGAT GGTAGAATCA ACCAGGATGC
  ACTTAGAAAA ACCCCTGAGT GAGTTAGAAT TGGAGAGCTG GCTCAGCAGT TAAGAGTGCT
  TGCTGCTCTT GCAGAAAACC CAAGTTCAGT TTCTAGCACC CATGTTGGGC AGCTCATAAT
  R
  CCCTTTAACT CCAGCTACAA GGGATCTGAT GCCCTTTTCT GGCCTCCATG GCACCTATGC
  TCATGTGTAC ATACTCAAAT TTAAATGTAT ACATATACAC ATAATTTAAA GTAACTCTTT
  TTTTTTCTGT CTCAAAAAGC TTTATCTTTA CTTGGTCCAA CACTTGAGAG AGGCTCCAGA
  GCAGTTACAA AGCTGCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776922	NES14544639	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36559059					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776922	NES14544639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440757 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	1325 bp downstream
Gm7541	predicted gene 7541	293 bp downstream
Gm9851	predicted gene 9851	1675 bp upstream
Gm55031	predicted gene, 55031	270 bp downstream
Tssr139859	transcription start site region 139859	1034 bp downstream