rs36559125 SNP Detail

Summary

• ID
  rs36559125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113367836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGAATTA GTTTGGTCCT
  TTGCGGTACC TGGCTTTCTT TATTCTAGTT TTGTAGTTAC TGTTAGAGGT ACTCCTGGTG
  AAGGTGGGAG ATCAGGAGGA AATGGCAGCT GGTCACTCAA CCCTCAAAAG ACATCCTTAT
  TCTGGTGAGC CAGCTAAAAT CCTCCTTTGT CATGGATTAT CTCCCAAGGT CCAAAGTCCC
  W
  AAAACCAGAT TTGCACGCTG AGAACAGACC AGATTGCTGC CAACCAACCA ATTCTCCTGG
  GAAATTCCAT TAACTAGGCA ATATCTGTGA TTGGGTTTGG CTGGACAGGC CGGGGTCGGG
  GAACCACCTT CACTCCAAAG GCACATTTGC TGACAGCTGG CTTCTTGGAC TGCTTGAATA
  GACACTGGTA GAATTGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841821	NES14761265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36559125					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841821	NES14761265	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113367836 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	427 bp downstream
Cpgi17842	CpG island 17842	1292 bp proximal
Rr636505	regulatory region 636505	1165 bp proximal
Tssr58201	transcription start site region 58201	1889 bp downstream
Tssr58202	transcription start site region 58202	1816 bp downstream
Tssr58203	transcription start site region 58203	1762 bp downstream
Tssr58204	transcription start site region 58204	1655 bp downstream
Tssr58205	transcription start site region 58205	1616 bp downstream
Tssr58206	transcription start site region 58206	1594 bp downstream
Tssr58207	transcription start site region 58207	159 bp downstream
Tssr58208	transcription start site region 58208	1542 bp upstream
Tssr58209	transcription start site region 58209	1635 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates