rs36560847 SNP Detail

Summary

• ID
  rs36560847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:50845304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTTGCA GATTACATTT
  TTTATTTAAA TAGATCCTTG TTTCCACTAC TTTTCTTCTA TGTTATTGTC AGTCATAGAG
  AATAAAGCAC AGCTGTTTTA TGTATTTTTT TGAGTTTGTG CTGCACCCCC ATTGTTCACT
  CCAATTACCT GTTACCTCCG AAGTATCCCC ATGAGCACCA TTACCAGAGT ATGTTCATCT
  R
  GAGGCTTCTG ACATCCGTCT GAGTTGCTTG AAAATGTCAA TGCTTATCAT CAGGCCAAGG
  TACAATCTGC TTTCTCTACT ACATAACCAC TTCTTATCTT TTTCAAATGA AAGGGAGTTT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTGGTTAG ACTCTTGAAG ACCCTAAAAG
  TTGTTTATTC CTCATGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50863464	NES14174761	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		G	G		A
ss323299477	CHEV_10_50689014	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36560847					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50863464	NES14174761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:50845304 () rs orientation: forward

Symbol	Name	Function Class
Sim1	single-minded family bHLH transcription factor 1	within coordinates
Tssr93227	transcription start site region 93227	153 bp upstream