rs36562261 SNP Detail

Summary

• ID
  rs36562261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3771457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTCATT AAAGCTTCTG
  ACTGAGACTC AGCTGGGAAG GGGTTCATCA TGCTGCTTTC AATCCATACA AATCGTTTGC
  AAGGAGAGGA ATTTGCTGAC ATTCTATCTG GGATTGCAGT GAATCTCACA CCAAGCAGTC
  CTGAGAGCGT GGTGATGCTC TCTATGAATA TGGAGCATCT TTATATTTCA TTCATCTCAT
  Y
  AGAGTCTAGA ATTAGAGATT TGTAGCCTGT CTTTTGTAAT TATACACATA GTCTGATTTA
  TCTTGTCCGA GTTTCATTTC TGTTGATTGC AAAAATATCT GACAGATAGC ACAGAACTCC
  AGGACTCTTC TTCCTTATAC CACCAGGGAG GCCTTCTCCT CTCTACCTCT GAGGACGCAC
  CTCTGTCCCA CAGAAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51192232	NES14311568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36562261					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51192232	NES14311568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3771457 () rs orientation: forward

Symbol	Name	Function Class
6820402I19Rik	RIKEN cDNA 6820402I19 gene	1588 bp downstream
Rr389165	regulatory region 389165	698 bp upstream
Ube2e2	ubiquitin-conjugating enzyme E2E 2	within coordinates